Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015793019.1_cds_XP_016515477.1_2709
CDS Infomation

[gene=LOC107832175] [db_xref=GeneID:107832175] [protein=calcium-transporting ATPase 12, plasma membrane-type-like] [protein_id=XP_016515477.1] [location=join(29014..29839,29998..30551,30732..32375)] [gbkey=CDS]
Sequence

ATGGCTCTCCACTCACCCAAACACAGTGATGCCATAATATTTTTAAGCAATGACAGTTCC
CTGGGGAAATTAAAACCCCAGAAGAGGTTGCAGTTGGTTTTTAGAGCCATATATTTTGTG
GCTTTCTTGACCAAGAAAAAGATTGGTAGAAACACATTAATCCTTTCTCAGTTGTTGTGC
AATCCATCTGTCGTAATTGACATTGAAAGCATCAATGATCATAAGGAAGACGAACTTTTT
CATGGCATCAACAAGGAAGCACTTGCCAAGTTGGTCAGAGAGAAAGATTTCAATGGCCTC
CTCCAATTTGGAGGGGTGCGACAAATCGAAGAAATTCTTGGAGCAGACCAGAAGTCAGGC
TTAAGAATGAATGAGAATGACCTAAAACAAAGAAAGGAAATTTTTGGCTCCAACATATAT
GAGAAGCCACCAGCCAAGAGTTTCTTGAGTTTTGTACTTGAAGCTTTCAAAGACACAACC
ATTATCATCCTTCTGGTATGTGCTGTTTTCTCCCTTGGATTCGGAATTAAACAGCACGGA
CCCAAGGAAGGATGGTATGATGGCGGAAGTATCATCGTTGCAGTTGTTCTTGTCCTTGCA
GTCTCTTCCATCAGCAACTTCAAACAAAGCAGGCAGTTTATGAAGCTCTCGGATGAAAGC
AAAGATATAAAAGTGGAAGTAGTGAGAGACAGACGCAGACAGGAAGTATCAATCTTTGAA
ATAGTGGTGGGTGATGTCGTCTGTCTTAAAATTGGCGATCACATTGCAGCAGATGGACTC
TTCTTGGATGGCCACTCGCTGCAAGTAGACGAGTCCAGCATGACAGGTGAAAGTGATCAC
GTTGAAATAAACAAGACACAGAATCCCTTTTTGATCTGCGGAACAAAGGTAATGGACGGA
TATGGACACATGCTTGTCACATCAGTGGGTACAAATAATGCATGGGGTCAGATGATGAGC
AATATAACAGATGACAAGAATGAGCAAACCCCACTGCAGCAACGGCTAAACAAGCTTACC
AAGTATATCGGGAATGTTGGTCTATTAGTGGCTTTTCTTGTTCTAGTCACTCTATTGATC
CGTTACTTCACAGGACATAGTGAATATGACAATGGTCGTCAGGAGTTCATAGGAAGCAAA
ACCAAAGCAGGTGATATCATGAATTCTTTGGTTCGTATGATTGCTGCAGCAGTAACCATC
ATAGTGGTTGCAATTCCAGAAGGTCTGCCATTGGCTGTCACACTAACTTTGGCATATTCT
ATGAGAAGAATGATGCTCGATCATGCAATGGTCCGTAAGCTATCTGCATGTGAGACAATG
GGATCAGCAACTACCATCTGCACAGACAAAACCGGAACTCTCACCTTAAACAAGATGCAG
GTAACTGAATTTTGGTTAGGAACAGATATGATTATGACGACATCACAGATAGCACCTGAA
GTTCTTGAACTGCTACAAGAGGCTGCTGGTTTGAACACTACAGGTGAAGTTTACACGTCA
CCTTCTGGTCCTCCAGAAATCTCTGGTGGCCCAACTGAGAAAGCGATTTTATCATGGGCC
ATGACCAGTTTACTAGTGAACTTTAATGAATTAAATCGAGAGCATCGAATCCTCCATGTT
GAAGTTTTCAATTCACAAAAGAAAAGAAGTGGGGTATTGTTAATAAAAAATAATACAGGG
AAAGTTCATACACATTGGAAGGGTGCTGCAGAGATGATTCTAGCTATGTGCTCCACTTAT
TATGTCAAAGGTGGAATAATTTCACCTATAGATCATGAAGAAAGAAAAGAACTTGAGTTG
AAGATCAAATATATGGCAAGCAAGAGCTTGCGATGTATTGCATTTGCTTGCAAAGAAAGC
AATCCAGAAAGTCAAATTCTTGAAGAAACCGAACTAACCTTATTGGGTCTAGTGGGTCTA
AAGGACCCATGTAGGCCTGGTGTAAAAGAGGCAGTAGAATCCTGCAGGGCTGCTGGTGTT
AGCATAAAAATGATTACTGGGGACAATGTGTTCACAGCCAAATCAATAGCTCTTGAATGT
GGAATTCTCCAACCAGCTGAAGACTTGAATATTGCAGTAATTGAAGGGCCGACATTCAGG
AATTACTCACAAGAAGAGAGAATGAAGATTGTTGAAAGAATACGCGTTATGGCAAGATCT
TCACCATTTGATAAGCTTTTGATGGTTGAATGTTTGAAGCAGAAAGGCCATGTTGTAGCA
GTAACAGGCGATGGAACAAATGATGCTCCTGCATTAAAAGCCGCAGATGTTGGACTTTCC
ATGGGAATCCAAGGCACAGAAGTTGCAAAGGAGAGTTCCGATATAGTTATCTTGGATGAC
AACTTCAATACAGTGGTCACAGTCTTGAAGTGGGGTAGGTGCGTATATAATAACATTCAA
AAGTTTATTCAATTTCAGCTCACAGTAAATGTTGCTGCTCTTGTTATCAACTTTGTTGCT
GCTGCATCATCTGGAGAAGTCCCTCTGACAGCAGTGCAACTTCTATGGGTTAATCTCATA
ATGGATACTCTTGGGGCCTTAGCTTTGGCAACTGAGCGACCCAGTAGTGAACTAATGAAC
AAAAAACCAGTTGGACGAACTGAACCTTTGATAACTGCTGTGATGTGGAGGAATATCATT
GCTCAGGCCTTATACCAGGTAACAGTGCTATTGATCCTGCAGTTCAAAGGAAGTTCCATC
TTTCATGTGAATAAGAATGTAAAAGACACCTTGATCTTCAACACTTTCGTCTTCTGTCAA
ATCTTCAATGAGTTCAATGCCAGGAAGTTGGAGAAGAAAAACATATTCCATGGAATACTG
AAGAACAGACTGTTTATTGTGATAGTGGGAATGACAATACTTCTCCAGGTAATTATGGTT
GAATTCCTGCGGAAGTTTGCTGATACTGAAAGGCTGAATTGGAGGCAATGGGCCGTATGC
ATGGGTATTTCTTCACTTTCATGGCCTATTGGTTGGATTATGAAGTGCATTCCTGTATCG
AAAAATGAAAACTTCAATCACTAA

Peptide Sequence

PEP ID

XP_016515477.1
PEP Infomation

PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Nicotiana tabacum]
Sequence

MALHSPKHSDAIIFLSNDSSLGKLKPQKRLQLVFRAIYFVAFLTKKKIGRNTLILSQLLC
NPSVVIDIESINDHKEDELFHGINKEALAKLVREKDFNGLLQFGGVRQIEEILGADQKSG
LRMNENDLKQRKEIFGSNIYEKPPAKSFLSFVLEAFKDTTIIILLVCAVFSLGFGIKQHG
PKEGWYDGGSIIVAVVLVLAVSSISNFKQSRQFMKLSDESKDIKVEVVRDRRRQEVSIFE
IVVGDVVCLKIGDHIAADGLFLDGHSLQVDESSMTGESDHVEINKTQNPFLICGTKVMDG
YGHMLVTSVGTNNAWGQMMSNITDDKNEQTPLQQRLNKLTKYIGNVGLLVAFLVLVTLLI
RYFTGHSEYDNGRQEFIGSKTKAGDIMNSLVRMIAAAVTIIVVAIPEGLPLAVTLTLAYS
MRRMMLDHAMVRKLSACETMGSATTICTDKTGTLTLNKMQVTEFWLGTDMIMTTSQIAPE
VLELLQEAAGLNTTGEVYTSPSGPPEISGGPTEKAILSWAMTSLLVNFNELNREHRILHV
EVFNSQKKRSGVLLIKNNTGKVHTHWKGAAEMILAMCSTYYVKGGIISPIDHEERKELEL
KIKYMASKSLRCIAFACKESNPESQILEETELTLLGLVGLKDPCRPGVKEAVESCRAAGV
SIKMITGDNVFTAKSIALECGILQPAEDLNIAVIEGPTFRNYSQEERMKIVERIRVMARS
SPFDKLLMVECLKQKGHVVAVTGDGTNDAPALKAADVGLSMGIQGTEVAKESSDIVILDD
NFNTVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVINFVAAASSGEVPLTAVQLLWVNLI
MDTLGALALATERPSSELMNKKPVGRTEPLITAVMWRNIIAQALYQVTVLLILQFKGSSI
FHVNKNVKDTLIFNTFVFCQIFNEFNARKLEKKNIFHGILKNRLFIVIVGMTILLQVIMV
EFLRKFADTERLNWRQWAVCMGISSLSWPIGWIMKCIPVSKNENFNH

Transcript Sequence

Gene sequence data has not been registered.